6A8R

Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

DUX4HD2-DNAERGstructure reveals new insight into DUX4-Responsive-Element

Dong, X.Zhang, H.Cheng, N.Li, K.Meng, G.

(2018) Leukemia --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Double homeobox protein 4
B, A
60Homo sapiensMutation(s): 0 
Gene Names: DUX4 (DUX10)
Find proteins for Q9UBX2 (Homo sapiens)
Go to Gene View: DUX4
Go to UniProtKB:  Q9UBX2
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*AP*TP*GP*AP*GP*AP*TP*T)-3')E11Homo sapiens
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*AP*TP*CP*TP*CP*AP*TP*CP*A)-3')F11Homo sapiens
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.201 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 32.550α = 90.00
b = 32.550β = 90.00
c = 126.591γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
PHASERphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81770142

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release
  • Version 1.1: 2018-11-07
    Type: Data collection, Database references