6A41 | pdb_00006a41

Dehalogenation enzyme

PDB DOI: https://doi.org/10.2210/pdb6A41/pdb

Classification: OXIDOREDUCTASE
Organism(s): Rhodospirillaceae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-06-18 Released: 2019-06-19
Deposition Author(s): Yin, B., Yuan, A.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.97 Å
R-Value Free:
0.183 (Depositor)
R-Value Work:
0.146 (Depositor)
R-Value Observed:
0.148 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6A41

This is version 1.1 of the entry. See complete history.

Literature

Structure of a new dehalogenase at 1.9 Angstroms resolution

Yin, B., Yuan, A.Y.

To be published.

Macromolecule Content

Total Structure Weight: 26.21 kDa
Atom Count: 2,005
Modeled Residue Count: 244
Deposited Residue Count: 244
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
dehalogenase	A	244	Rhodospirillaceae	Mutation(s): 0
UniProt
Find proteins for A0A5H1ZR29 (Rhodospirillaceae) Explore A0A5H1ZR29 Go to UniProtKB: A0A5H1ZR29
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A5H1ZR29
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.97 Å
R-Value Free: 0.183 (Depositor)
R-Value Work: 0.146 (Depositor)
R-Value Observed: 0.148 (Depositor)

Space Group: F 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.895	α = 90
b = 113.57	β = 90
c = 141.926	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MoRDa	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-06-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-06-19
Type: Initial release
Version 1.1: 2024-10-09
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.