5Z6Y

Structure of sfYFP48S95C66BPA

• PDB DOI: https://doi.org/10.2210/pdb5Z6Y/pdb

• Classification: FLUORESCENT PROTEIN
• Organism(s): Aequorea victoria
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2018-01-25 Released: 2019-06-12 
• Deposition Author(s): Wang, J.Y., Wang, J.Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free: 0.236 
• R-Value Work: 0.209 
• R-Value Observed: 0.210 

Literature

structure of sfYFP48S95C66BPA at 1.95 Angstroms resolution

Wang, J.Y., Wang, J.Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 25.9 kDa 
• Atom Count: 1,868 
• Modelled Residue Count: 226 
• Deposited Residue Count: 229 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Green fluorescent protein	A	229	Aequorea victoria	Mutation(s): 15  Gene Names: gfp
UniProt
Find proteins for P42212 (Aequorea victoria) Explore P42212  Go to UniProtKB:  P42212

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
BF6	A	L-PEPTIDE LINKING	C20 H17 N3 O4		GLY, TYR, GLY

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free: 0.236 
• R-Value Work: 0.209 
• R-Value Observed: 0.210 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.574	α = 90
b = 51.574	β = 90
c = 179.459	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-06-12 
Deposition Author(s): Wang, J.Y., Wang, J.Y.

Revision History  

• Version 1.0: 2019-06-12
  Type: Initial release