5Z1O | pdb_00005z1o

Crystal structure of an OspA mutant

PDB DOI: https://doi.org/10.2210/pdb5Z1O/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Borreliella burgdorferi
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2017-12-27 Released: 2019-01-02
Deposition Author(s): Takada, S., Makabe, K.
Funding Organization(s): kakenhi

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.262 (Depositor), 0.270 (DCC)
R-Value Work:
0.203 (Depositor), 0.210 (DCC)
R-Value Observed:
0.206 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of an OspA mutant.

Takada, S., Makabe, K.

To be published.

Macromolecule Content

Total Structure Weight: 68.93 kDa
Atom Count: 5,300
Modeled Residue Count: 632
Deposited Residue Count: 640
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer Surface Protein A	A, B	320	Borreliella burgdorferi	Mutation(s): 5
UniProt
Find proteins for D0VWU8 (Borreliella burgdorferi) Explore D0VWU8 Go to UniProtKB: D0VWU8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	D0VWU8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.262 (Depositor), 0.270 (DCC)
R-Value Work: 0.203 (Depositor), 0.210 (DCC)
R-Value Observed: 0.206 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 36.14	α = 90
b = 81.731	β = 91.4
c = 110.344	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-01-02

Deposition Author(s):

Funding Organization	Location	Grant Number
kakenhi	Japan	--

Revision History (Full details and data files)

Version 1.0: 2019-01-02
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.