5XYF

Crystal structure of the human TIN2-TPP1-TRF2 telomeric complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural and functional analyses of the mammalian TIN2-TPP1-TRF2 telomeric complex.

Hu, C.Rai, R.Huang, C.Broton, C.Long, J.Xu, Y.Xue, J.Lei, M.Chang, S.Chen, Y.

(2017) Cell Res 27: 1485-1502

  • DOI: https://doi.org/10.1038/cr.2017.144
  • Primary Citation of Related Structures:  
    5XYF

  • PubMed Abstract: 

    Telomeres are nucleoprotein complexes that play essential roles in protecting chromosome ends. Mammalian telomeres consist of repetitive DNA sequences bound by the shelterin complex. In this complex, the POT1-TPP1 heterodimer binds to single-stranded telomeric DNAs, while TRF1 and TRF2-RAP1 interact with double-stranded telomeric DNAs. TIN2, the linchpin of this complex, simultaneously interacts with TRF1, TRF2, and TPP1 to mediate the stable assembly of the shelterin complex. However, the molecular mechanism by which TIN2 interacts with these proteins to orchestrate telomere protection remains poorly understood. Here, we report the crystal structure of the N-terminal domain of TIN2 in complex with TIN2-binding motifs from TPP1 and TRF2, revealing how TIN2 interacts cooperatively with TPP1 and TRF2. Unexpectedly, TIN2 contains a telomeric repeat factor homology (TRFH)-like domain that functions as a protein-protein interaction platform. Structure-based mutagenesis analyses suggest that TIN2 plays an important role in maintaining the stable shelterin complex required for proper telomere end protection.


  • Organizational Affiliation

    State Key Laboratory of Molecular Biology, National Center for Protein Science Shanghai, Shanghai Science Research Center, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences; University of Chinese Academy of Sciences, 333 Haike Road, Shanghai 201210, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TERF1-interacting nuclear factor 2204Homo sapiensMutation(s): 0 
Gene Names: TINF2TIN2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSI4 (Homo sapiens)
Explore Q9BSI4 
Go to UniProtKB:  Q9BSI4
PHAROS:  Q9BSI4
GTEx:  ENSG00000092330 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BSI4
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Telomeric repeat-binding factor 2B [auth C]18Homo sapiensMutation(s): 0 
Gene Names: TERF2TRBF2TRF2
UniProt & NIH Common Fund Data Resources
Find proteins for Q15554 (Homo sapiens)
Explore Q15554 
Go to UniProtKB:  Q15554
PHAROS:  Q15554
GTEx:  ENSG00000132604 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15554
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Adrenocortical dysplasia protein homologC [auth B]40Homo sapiensMutation(s): 0 
Gene Names: ACDPIP1PTOPTINT1TPP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q96AP0 (Homo sapiens)
Explore Q96AP0 
Go to UniProtKB:  Q96AP0
PHAROS:  Q96AP0
GTEx:  ENSG00000102977 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96AP0
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.197 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 46.222α = 90
b = 112.258β = 90
c = 121.209γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
SHARPphasing
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science FoundationChina31470737
Ministry of Science and Technology of ChinaChina2013CB910401

Revision History  (Full details and data files)

  • Version 1.0: 2017-12-13
    Type: Initial release