5XSK

Crystal structure of PWWP-DNA complex for human hepatoma-derived growth factor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of PWWP-DNA complex at 2.84 Angstroms resolution

Chen, L.Y.Huang, Y.C.Hsieh, Y.C.Lin, P.J.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Hepatoma-derived growth factorAB120Rattus norvegicusMutation(s): 0 
Gene Names: Hdgf
Find proteins for Q8VHK7 (Rattus norvegicus)
Explore Q8VHK7 
Go to UniProtKB:  Q8VHK7
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(P*TP*TP*CP*AP*AP*GP*AP*CP*CP*A)-3')D10Escherichia coli BL21
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(P*TP*GP*GP*TP*CP*TP*TP*GP*AP*A)-3')F10Escherichia coli BL21
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      MPD
      Query on MPD

      Download CCD File 
      A, B
      (4S)-2-METHYL-2,4-PENTANEDIOL
      C6 H14 O2
      SVTBMSDMJJWYQN-YFKPBYRVSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 2.84 Å
      • R-Value Free: 0.269 
      • R-Value Work: 0.191 
      • R-Value Observed: 0.195 
      • Space Group: P 31
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 32.402α = 90
      b = 32.402β = 90
      c = 205.82γ = 120
      Software Package:
      Software NamePurpose
      REFMACrefinement
      HKL-2000data reduction
      HKL-2000data scaling
      MOLREPphasing

      Structure Validation

      View Full Validation Report



      Entry History 

      Deposition Data

      Revision History 

      • Version 1.0: 2018-06-20
        Type: Initial release
      • Version 1.1: 2018-06-27
        Changes: Data collection, Derived calculations