5XSK

Crystal structure of PWWP-DNA complex for human hepatoma-derived growth factor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of PWWP-DNA complex at 2.84 Angstroms resolution

Chen, L.Y.Huang, Y.C.Hsieh, Y.C.Lin, P.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Hepatoma-derived growth factor
A, B
120Rattus norvegicusMutation(s): 0 
Gene Names: Hdgf
Find proteins for Q8VHK7 (Rattus norvegicus)
Go to UniProtKB:  Q8VHK7
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*TP*CP*AP*AP*GP*AP*CP*CP*A)-3')D10Escherichia coli BL21
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*GP*TP*CP*TP*TP*GP*AP*A)-3')F10Escherichia coli BL21
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download SDF File 
Download CCD File 
A, B
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.191 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 32.402α = 90.00
b = 32.402β = 90.00
c = 205.820γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-06-20
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Derived calculations