5WLC

The complete structure of the small subunit processome

  • Classification: RIBOSOME
  • Organism(s): Saccharomyces cerevisiae BY4741
  • Mutation(s): No 

  • Deposited: 2017-07-26 Released: 2017-09-27 
  • Deposition Author(s): Barandun, J., Chaker-Margot, M., Hunziker, M., Klinge, S.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), European Molecular Biology Organization (EMBO), Swiss National Science Foundation, Natural Sciences and Engineering Research Council (NSERC, Canada), Human Frontier Science Program (HFSP)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

The complete structure of the small-subunit processome.

Barandun, J.Chaker-Margot, M.Hunziker, M.Molloy, K.R.Chait, B.T.Klinge, S.

(2017) Nat Struct Mol Biol 24: 944-953

  • DOI: https://doi.org/10.1038/nsmb.3472
  • Primary Citation of Related Structures:  
    5WLC

  • PubMed Abstract: 

    The small-subunit processome represents the earliest stable precursor of the eukaryotic small ribosomal subunit. Here we present the cryo-EM structure of the Saccharomyces cerevisiae small-subunit processome at an overall resolution of 3.8 Å, which provides an essentially complete near-atomic model of this assembly. In this nucleolar superstructure, 51 ribosome-assembly factors and two RNAs encapsulate the 18S rRNA precursor and 15 ribosomal proteins in a state that precedes pre-rRNA cleavage at site A1. Extended flexible proteins are employed to connect distant sites in this particle. Molecular mimicry and steric hindrance, as well as protein- and RNA-mediated RNA remodeling, are used in a concerted fashion to prevent the premature formation of the central pseudoknot and its surrounding elements within the small ribosomal subunit.


  • Organizational Affiliation

    Laboratory of Protein and Nucleic Acid Chemistry, The Rockefeller University, New York, New York, USA.


Macromolecules

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
rpS18_uS13D [auth L3]146Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
rpS4_eS4E [auth L4]261Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
rpS5_uS7F [auth L5]225Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
rpS6_eS6G [auth L6]236Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
rpS7_eS7H [auth L7]190Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
rpS8_eS8I [auth L8]200Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
rpS9_uS4J [auth L9]197Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
rpS16_uS9K [auth LC]143Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
rpS11_uS17L [auth LD]156Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
rpS22_uS8M [auth LE]130Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
rpS24_eS24N [auth LF]135Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
rpS28_eS28O [auth LG]67Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Utp17P [auth LH]896Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Utp8Q [auth LI]713Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Utp15R [auth LJ]513Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Utp9S [auth LK]575Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Utp5T [auth LL]643Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Utp10U [auth LM]1,769Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Utp4V [auth LN]776Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Utp1W [auth LO]923Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Utp6X [auth LP]440Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Utp12Y [auth LQ]943Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Utp13Z [auth LR]817Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Utp18AA [auth LS]594Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Utp21BA [auth LT]939Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Sof1CA [auth LU]489Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Enp2DA [auth LV]707Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Utp7EA [auth LW]554Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Kre33FA [auth LX],
GA [auth LY]
1,056Saccharomyces cerevisiae BY4741Mutation(s): 0 
EC: 2.3.1
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Imp3HA [auth LZ]183Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Mpp10IA [auth NA]593Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Sas10JA [auth NB]610Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Lcp5KA [auth NC]357Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Bud21LA [auth ND]214Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Faf1MA [auth NE]346Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
rpS13_uS15NA [auth NF]151Saccharomyces cerevisiae BY4741Mutation(s): 0 
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MoleculeChains Sequence LengthOrganismDetailsImage
rpS14_uS11OA [auth NG]137Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Utp22PA [auth NH]1,237Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp7QA [auth NI]297Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp5RA [auth NJ]1,729Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Krr1SA [auth NK]316Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Nop56TA [auth SA]504Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
Nop58UA [auth SB]511Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Nop1VA [auth SC],
WA [auth SD]
327Saccharomyces cerevisiae BY4741Mutation(s): 0 
EC: 2.1.1
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Snu13XA [auth SE],
YA [auth SF]
126Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P39990 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Rrp9ZA [auth SG]573Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q06506 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Rcl1AB [auth SH]367Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q08096 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Bms1BB [auth SI]1,184Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q08965 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Emg1CB [auth SJ],
DB [auth SK]
252Saccharomyces cerevisiae BY4741Mutation(s): 0 
EC: 2.1.1.260
UniProt
Find proteins for Q06287 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Utp24EB [auth SL]189Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q05498 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Imp4FB [auth SM]290Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P53941 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
Utp30GB [auth SN]274Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P36144 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Pno1HB [auth SO]274Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q99216 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
Utp20IB [auth SP]982Saccharomyces cerevisiae BY4741Mutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
Fcf2JB [auth SQ]217Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q12035 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
rpS23_uS12KB [auth SR]145Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CY39 (Naumovozyma castellii (strain ATCC 76901 / BCRC 22586 / CBS 4309 / NBRC 1992 / NRRL Y-12630))
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
Utp14LB [auth SS]898Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q04500 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
Nop14MB [auth ST]792Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q99207 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
Noc4NB [auth SU]552Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q06512 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Rrt14OB [auth SV]206Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for B5VKI1 (Saccharomyces cerevisiae (strain AWRI1631))
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Find proteins for E9P9B2 (Saccharomyces cerevisiae)
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