5WLC

The complete structure of the small subunit processome

  • Classification: RIBOSOME
  • Organism(s): Saccharomyces cerevisiae BY4741
  • Mutation(s): No 

  • Deposited: 2017-07-26 Released: 2017-09-27 
  • Deposition Author(s): Barandun, J., Chaker-Margot, M., Hunziker, M., Klinge, S.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), European Molecular Biology Organization (EMBO), Swiss National Science Foundation, Natural Sciences and Engineering Research Council (NSERC, Canada), Human Frontier Science Program (HFSP)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The complete structure of the small-subunit processome.

Barandun, J.Chaker-Margot, M.Hunziker, M.Molloy, K.R.Chait, B.T.Klinge, S.

(2017) Nat Struct Mol Biol 24: 944-953

  • DOI: 10.1038/nsmb.3472
  • Primary Citation of Related Structures:  
    5WLC

  • PubMed Abstract: 
  • The small-subunit processome represents the earliest stable precursor of the eukaryotic small ribosomal subunit. Here we present the cryo-EM structure of the Saccharomyces cerevisiae small-subunit processome at an overall resolution of 3.8 Å, which provides an essentially complete near-atomic model of this assembly ...

    The small-subunit processome represents the earliest stable precursor of the eukaryotic small ribosomal subunit. Here we present the cryo-EM structure of the Saccharomyces cerevisiae small-subunit processome at an overall resolution of 3.8 Å, which provides an essentially complete near-atomic model of this assembly. In this nucleolar superstructure, 51 ribosome-assembly factors and two RNAs encapsulate the 18S rRNA precursor and 15 ribosomal proteins in a state that precedes pre-rRNA cleavage at site A1. Extended flexible proteins are employed to connect distant sites in this particle. Molecular mimicry and steric hindrance, as well as protein- and RNA-mediated RNA remodeling, are used in a concerted fashion to prevent the premature formation of the central pseudoknot and its surrounding elements within the small ribosomal subunit.


    Organizational Affiliation

    Laboratory of Protein and Nucleic Acid Chemistry, The Rockefeller University, New York, New York, USA.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
rpS18_uS13D [auth L3]146Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX55 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX55 
Go to UniProtKB:  P0CX55
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX55
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
rpS4_eS4E [auth L4]261Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX35 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX35 
Go to UniProtKB:  P0CX35
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX35
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
rpS5_uS7F [auth L5]225Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for A0A1L4AA68 (Saccharomyces cerevisiae)
Explore A0A1L4AA68 
Go to UniProtKB:  A0A1L4AA68
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1L4AA68
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
rpS6_eS6G [auth L6]236Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX37 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX37 
Go to UniProtKB:  P0CX37
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX37
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
rpS7_eS7H [auth L7]190Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P26786 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P26786 
Go to UniProtKB:  P26786
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP26786
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
rpS8_eS8I [auth L8]200Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX39 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX39 
Go to UniProtKB:  P0CX39
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX39
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
rpS9_uS4J [auth L9]197Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for O13516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore O13516 
Go to UniProtKB:  O13516
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO13516
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
rpS16_uS9K [auth LC]143Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX51 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX51 
Go to UniProtKB:  P0CX51
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX51
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
rpS11_uS17L [auth LD]156Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX47 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX47 
Go to UniProtKB:  P0CX47
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX47
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
rpS22_uS8M [auth LE]130Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0C0W1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0C0W1 
Go to UniProtKB:  P0C0W1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0C0W1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
rpS24_eS24N [auth LF]135Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CX31 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P0CX31 
Go to UniProtKB:  P0CX31
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CX31
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
rpS28_eS28O [auth LG]67Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q3E7X9 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q3E7X9 
Go to UniProtKB:  Q3E7X9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3E7X9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
Utp17P [auth LH]896Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q02931 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q02931 
Go to UniProtKB:  Q02931
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02931
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
Utp8Q [auth LI]713Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P53276 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53276 
Go to UniProtKB:  P53276
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53276
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Utp15R [auth LJ]513Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q04305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04305 
Go to UniProtKB:  Q04305
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04305
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
Utp9S [auth LK]575Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P38882 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38882 
Go to UniProtKB:  P38882
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38882
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
Utp5T [auth LL]643Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q04177 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04177 
Go to UniProtKB:  Q04177
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04177
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
Utp10U [auth LM]1,769Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P42945 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P42945 
Go to UniProtKB:  P42945
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42945
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
Utp4V [auth LN]776Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q06679 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06679 
Go to UniProtKB:  Q06679
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06679
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
Utp1W [auth LO]923Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P25635 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25635 
Go to UniProtKB:  P25635
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25635
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
Utp6X [auth LP]440Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q02354 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q02354 
Go to UniProtKB:  Q02354
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ02354
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
Utp12Y [auth LQ]943Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q12220 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12220 
Go to UniProtKB:  Q12220
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12220
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
Utp13Z [auth LR]817Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q05946 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q05946 
Go to UniProtKB:  Q05946
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05946
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
Utp18AA [auth LS]594Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P40362 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40362 
Go to UniProtKB:  P40362
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40362
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
Utp21BA [auth LT]939Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q06078 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06078 
Go to UniProtKB:  Q06078
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06078
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
Sof1CA [auth LU]489Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P33750 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P33750 
Go to UniProtKB:  P33750
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33750
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
Enp2DA [auth LV]707Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P48234 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P48234 
Go to UniProtKB:  P48234
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP48234
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
Utp7EA [auth LW]554Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P40055 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40055 
Go to UniProtKB:  P40055
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40055
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
Kre33FA [auth LX],
GA [auth LY]
1,056Saccharomyces cerevisiae BY4741Mutation(s): 0 
EC: 2.3.1
UniProt
Find proteins for P53914 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53914 
Go to UniProtKB:  P53914
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53914
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
Imp3HA [auth LZ]183Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P32899 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32899 
Go to UniProtKB:  P32899
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32899
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
Mpp10IA [auth NA]593Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P47083 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P47083 
Go to UniProtKB:  P47083
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47083
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
Sas10JA [auth NB]610Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q12136 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12136 
Go to UniProtKB:  Q12136
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12136
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
Lcp5KA [auth NC]357Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P40079 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40079 
Go to UniProtKB:  P40079
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40079
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
Bud21LA [auth ND]214Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q08492 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08492 
Go to UniProtKB:  Q08492
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08492
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
Faf1MA [auth NE]346Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P40546 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40546 
Go to UniProtKB:  P40546
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40546
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
rpS13_uS15NA [auth NF]151Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P05756 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05756 
Go to UniProtKB:  P05756
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05756
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
rpS14_uS11OA [auth NG]137Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P06367 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P06367 
Go to UniProtKB:  P06367
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06367
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
Utp22PA [auth NH]1,237Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P53254 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53254 
Go to UniProtKB:  P53254
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53254
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
Rrp7QA [auth NI]297Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P25368 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25368 
Go to UniProtKB:  P25368
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25368
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
Rrp5RA [auth NJ]1,729Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q05022 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q05022 
Go to UniProtKB:  Q05022
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05022
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
Krr1SA [auth NK]316Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for B3LU25 (Saccharomyces cerevisiae (strain RM11-1a))
Explore B3LU25 
Go to UniProtKB:  B3LU25
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB3LU25
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
Nop56TA [auth SA]504Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q12460 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12460 
Go to UniProtKB:  Q12460
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12460
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
Nop58UA [auth SB]511Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q12499 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12499 
Go to UniProtKB:  Q12499
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12499
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
Nop1VA [auth SC],
WA [auth SD]
327Saccharomyces cerevisiae BY4741Mutation(s): 0 
EC: 2.1.1
UniProt
Find proteins for P15646 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P15646 
Go to UniProtKB:  P15646
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15646
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
Snu13XA [auth SE],
YA [auth SF]
126Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P39990 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39990 
Go to UniProtKB:  P39990
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39990
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
Rrp9ZA [auth SG]573Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q06506 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06506 
Go to UniProtKB:  Q06506
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06506
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
Rcl1AB [auth SH]367Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q08096 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08096 
Go to UniProtKB:  Q08096
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08096
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
Bms1BB [auth SI]1,184Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q08965 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08965 
Go to UniProtKB:  Q08965
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08965
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
Emg1CB [auth SJ],
DB [auth SK]
252Saccharomyces cerevisiae BY4741Mutation(s): 0 
EC: 2.1.1.260
UniProt
Find proteins for Q06287 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06287 
Go to UniProtKB:  Q06287
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06287
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
Utp24EB [auth SL]189Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q05498 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q05498 
Go to UniProtKB:  Q05498
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ05498
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetailsImage
Imp4FB [auth SM]290Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P53941 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53941 
Go to UniProtKB:  P53941
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53941
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
Utp30GB [auth SN]274Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P36144 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36144 
Go to UniProtKB:  P36144
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36144
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
Pno1HB [auth SO]274Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q99216 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q99216 
Go to UniProtKB:  Q99216
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99216
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetailsImage
Utp20IB [auth SP]982Saccharomyces cerevisiae BY4741Mutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
Fcf2JB [auth SQ]217Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q12035 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12035 
Go to UniProtKB:  Q12035
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12035
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
rpS23_uS12KB [auth SR]145Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P0CY39 (Naumovozyma castellii (strain ATCC 76901 / BCRC 22586 / CBS 4309 / NBRC 1992 / NRRL Y-12630))
Explore P0CY39 
Go to UniProtKB:  P0CY39
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0CY39
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
Utp14LB [auth SS]898Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q04500 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04500 
Go to UniProtKB:  Q04500
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04500
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
Nop14MB [auth ST]792Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q99207 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q99207 
Go to UniProtKB:  Q99207
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99207
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetailsImage
Noc4NB [auth SU]552Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for Q06512 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06512 
Go to UniProtKB:  Q06512
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06512
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
Rrt14OB [auth SV]206Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for B5VKI1 (Saccharomyces cerevisiae (strain AWRI1631))
Explore B5VKI1 
Go to UniProtKB:  B5VKI1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB5VKI1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetailsImage
Unassigned peptidesPB [auth SX]103Saccharomyces cerevisiae BY4741Mutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetailsImage
Utp11QB [auth SY]250Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for B5VM59 (Saccharomyces cerevisiae (strain AWRI1631))
Explore B5VM59 
Go to UniProtKB:  B5VM59
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB5VM59
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetailsImage
Enp1RB [auth SZ]483Saccharomyces cerevisiae BY4741Mutation(s): 0 
UniProt
Find proteins for P38333 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38333 
Go to UniProtKB:  P38333
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38333
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsLengthOrganismImage
5' ETSA [auth L0]700Saccharomyces cerevisiae BY4741
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
18S pre-rRNAB [auth L1]1,807Saccharomyces cerevisiae BY4741
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsLengthOrganismImage
U3 snoRNAC [auth L2]333Saccharomyces cerevisiae BY4741
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
SB [auth SL]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2
MODEL REFINEMENTPHENIX1.12rc1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1DP2GM123459
European Molecular Biology Organization (EMBO)European UnionALTF 51-2014
Swiss National Science FoundationSwitzerland155515
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaPGS-D
Human Frontier Science Program (HFSP)France--

Revision History  (Full details and data files)

  • Version 1.0: 2017-09-27
    Type: Initial release
  • Version 1.1: 2017-10-11
    Changes: Database references
  • Version 1.2: 2017-10-18
    Changes: Author supporting evidence
  • Version 1.3: 2017-11-22
    Changes: Database references
  • Version 1.4: 2020-01-01
    Changes: Author supporting evidence