5WL2

VH1-69 germline antibody with CDR H3 sequence of CR9114

• PDB DOI: https://doi.org/10.2210/pdb5WL2/pdb

• Classification: ANTIVIRAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2017-07-25 Released: 2018-08-01 
• Deposition Author(s): Wilson, I.A., Lang, S.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.236 
• R-Value Work: 0.200 
• R-Value Observed: 0.202 

Literature

Anti-idiotypic antibody K1-18 engages VH1-69 precursor and affinity-matured, anti-stem antibodies through mimicry of the HA stem.

Wilson, I.A., Lang, S., Kurosawa, Y., Ohshima, N., Ota, T., Abadejos, J., Lee, P.S., Nemazee, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Cyclic - C2  (Explore in 3D)
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 94.62 kDa 
• Atom Count: 6,702 
• Modelled Residue Count: 862 
• Deposited Residue Count: 892 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heavy chain of VH1-69 germline antibody with CDR H3 sequence of CR9114	A [auth H], C [auth A]	230	Homo sapiens	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Germline-reverted light chain of CR9114	B [auth L], D [auth B]	216	Homo sapiens	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.236 
• R-Value Work: 0.200 
• R-Value Observed: 0.202 
• Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.125	α = 90
b = 71.125	β = 90
c = 185.705	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-08-01 
Deposition Author(s): Wilson, I.A., Lang, S.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R56 AI 117675

Revision History  

• Version 1.0: 2018-08-01
  Type: Initial release
  
• Version 1.1: 2019-04-17
  Changes: Author supporting evidence, Data collection
• Version 1.2: 2019-12-11
  Changes: Author supporting evidence