Crystal structure of glutamate racemase from Thermus Thermophilus in complex with D-glutamate
Cooling, G.T., Vance, N.R., Spies, M.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glutamate racemase | 278 | Thermus thermophilus | Mutation(s): 0  Gene Names: murI, TTHA1643 EC: 5.1.1.3 | ||
UniProt | |||||
Find proteins for Q5SHT7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHT7  Go to UniProtKB:  Q5SHT7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SHT7 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGL Query on DGL | E [auth A], L [auth B], Q [auth C], Z [auth D] | D-GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-GSVOUGTGSA-N | |||
NO3 Query on NO3 | AA [auth D] BA [auth D] CA [auth D] DA [auth D] F [auth A] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N | |||
CL Query on CL | EA [auth D] FA [auth D] K [auth A] O [auth B] P [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 81.677 | α = 90 |
b = 96.728 | β = 90 |
c = 179.066 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
SCALA | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM097373 |