5VO5

Crystal structure of Lgd-Shrub complex, single chain fusion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.243 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural Basis for Regulation of ESCRT-III Complexes by Lgd.

McMillan, B.J.Tibbe, C.Drabek, A.A.Seegar, T.C.M.Blacklow, S.C.Klein, T.

(2017) Cell Rep 19: 1750-1757

  • DOI: https://doi.org/10.1016/j.celrep.2017.05.026
  • Primary Citation of Related Structures:  
    5VNY, 5VO5

  • PubMed Abstract: 

    The ESCRT-III complex induces outward membrane budding and fission through homotypic polymerization of its core component Shrub/CHMP4B. Shrub activity is regulated by its direct interaction with a protein called Lgd in flies, or CC2D1A or B in humans. Here, we report the structural basis for this interaction and propose a mechanism for regulation of polymer assembly. The isolated third DM14 repeat of Lgd binds Shrub, and an Lgd fragment containing only this DM14 repeat and its C-terminal C2 domain is sufficient for in vivo function. The DM14 domain forms a helical hairpin with a conserved, positively charged tip, that, in the structure of a DM14 domain-Shrub complex, occupies a negatively charged surface of Shrub that is otherwise used for homopolymerization. Lgd mutations at this interface disrupt its function in flies, confirming functional importance. Together, these data argue that Lgd regulates ESCRT activity by controlling access to the Shrub self-assembly surface.


  • Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil and C2 domain-containing protein 1-like,GH13992p190Drosophila melanogasterMutation(s): 0 
Gene Names: l(2)gd1lgdCG4713shrbVps32CG8055Dmel_CG8055
UniProt
Find proteins for Q8T0Q4 (Drosophila melanogaster)
Explore Q8T0Q4 
Go to UniProtKB:  Q8T0Q4
Find proteins for Q9VKJ9 (Drosophila melanogaster)
Explore Q9VKJ9 
Go to UniProtKB:  Q9VKJ9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ9VKJ9Q8T0Q4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.240 
  • R-Value Observed: 0.243 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 120.97α = 90
b = 26.99β = 125.95
c = 82.84γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-06-14
    Type: Initial release
  • Version 1.1: 2023-10-04
    Changes: Data collection, Database references, Refinement description