5VO5 | pdb_00005vo5

Crystal structure of Lgd-Shrub complex, single chain fusion

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	IST1/CHMP3-like	8055754	3002301	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NUC	e5vo5A1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: NUC	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21528	Coiled-coil and C2 domain-containing protein 1, DM14 domain (CC2D1A-B_DM14)	Coiled-coil and C2 domain-containing protein 1, DM14 domain	-	Coiled-coil
A	PF03357	Snf7 (Snf7)	Snf7	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Coiled-coil and C2 domain-containing protein 1-like,GH13992p	DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding phospholipid binding lipid binding phosphatidylinositol phosphate binding	membrane organization vesicle budding from membrane transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization cellular process cellular component organization or biogenesis cellular localization intracellular transport endosomal transport membrane organization vesicle budding from membrane transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization cellular process cellular component organization or biogenesis cellular localization intracellular transport endosomal transport intercellular transport late endosome to vacuole transport late endosome to vacuole transport via multivesicular body sorting pathway multivesicular body sorting pathway establishment of localization in cell vacuolar transport endosome transport via multivesicular body sorting pathway mitotic cell cycle process cytoskeleton-dependent cytokinesis mitotic cytokinesis cytokinesis cell division cell cycle mitotic cell cycle cell cycle process developmental process multicellular organismal process cellular developmental process cell development developmental maturation nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation neuron remodeling anatomical structure maturation cell differentiation neuron development anatomical structure development neuron maturation cell maturation system development biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction catabolic process autophagy metabolic process process utilizing autophagic mechanism primary metabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway ubiquitin-dependent protein catabolic process protein metabolic process macromolecule metabolic process cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cell projection morphogenesis neuron projection morphogenesis dendrite development plasma membrane bounded cell projection organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sexual reproduction stem cell division reproductive process oogenesis multicellular organismal reproductive process cellular process involved in reproduction in multicellular organism developmental process involved in reproduction female gamete generation asymmetric cell division germ-line stem cell division gamete generation germ cell development asymmetric stem cell division female germ-line stem cell asymmetric division germline stem cell asymmetric division imaginal disc morphogenesis animal organ development wing disc development instar larval or pupal development metamorphosis wing disc morphogenesis imaginal disc development instar larval or pupal morphogenesis post-embryonic animal morphogenesis post-embryonic development animal organ morphogenesis positive regulation of organelle organization regulation of localization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of endosome organization positive regulation of biological process regulation of endosome organization positive regulation of intralumenal vesicle formation endosome organization endomembrane system organization positive regulation of cellular process regulation of biological process regulation of transport biological regulation regulation of organelle organization intralumenal vesicle formation positive regulation of transport regulation of intralumenal vesicle formation cellular response to stimulus response to stimulus negative regulation of signaling signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction Notch signaling pathway negative regulation of Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication sensory organ development sensory organ precursor cell division establishment of protein localization protein transport macromolecule localization intracellular protein localization intracellular protein transport eye development visual system development compound eye development sensory system development imaginal disc-derived wing morphogenesis imaginal disc-derived wing vein morphogenesis appendage development post-embryonic appendage morphogenesis imaginal disc-derived appendage morphogenesis appendage morphogenesis imaginal disc-derived appendage development RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	midbody cellular anatomical structure somatodendritic compartment cell projection proximal dendrite dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle endosome membrane protein-containing complex intracellular anatomical structure ESCRT complex midbody cellular anatomical structure somatodendritic compartment cell projection proximal dendrite dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle endosome membrane protein-containing complex intracellular anatomical structure ESCRT complex endosome membrane intracellular vesicle membrane protein complex intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle ESCRT III complex cytoplasm vesicle organelle membrane cell body neuronal cell body cell periphery cytoplasmic side of plasma membrane cytoplasmic side of membrane plasma membrane side of membrane fusome late endosome multivesicular body contractile ring cell cortex cytosol apicolateral plasma membrane plasma membrane region cytoplasmic side of apical plasma membrane apical part of cell apical plasma membrane nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005024	Snf7 family	Family
A	IPR000008	C2 domain	Domain
A	IPR039725	Coiled-coil and C2 domain-containing protein 1	Family
A	IPR006608	Coiled-coil and C2 domain-containing protein 1, DM14 domain	Domain
A	IPR035892	C2 domain superfamily	Homologous Superfamily
A	IPR037772	Freud, C2 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.