5UHI

Structure of RORgt bound to


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.198 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.257 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Identification and structure activity relationships of quinoline tertiary alcohol modulators of ROR gamma t.

Kummer, D.A.Cummings, M.D.Abad, M.Barbay, J.Castro, G.Wolin, R.Kreutter, K.D.Maharoof, U.Milligan, C.Nishimura, R.Pierce, J.Schalk-Hihi, C.Spurlino, J.Urbanski, M.Venkatesan, H.Wang, A.Woods, C.Xue, X.Edwards, J.P.Fourie, A.M.Leonard, K.

(2017) Bioorg. Med. Chem. Lett. 27: 2047-2057

  • DOI: 10.1016/j.bmcl.2017.02.044
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORγt) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions o ...

    A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORγt) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions of the quinoline core using structure-activity relationships and structure-based drug design methods led to the discovery of a series of modulators with improved RORγt inhibitory potency and inverse agonism properties.


    Organizational Affiliation

    Discovery Immunology, Janssen Research and Development, 3210 Merryfield Row, San Diego, CA 92121, United States. Electronic address: dkummer1@its.jnj.com.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor ROR-gamma
A, B
258Homo sapiensMutation(s): 0 
Gene Names: RORC (NR1F3, RORG, RZRG)
Find proteins for P51449 (Homo sapiens)
Go to Gene View: RORC
Go to UniProtKB:  P51449
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8A4
Query on 8A4

Download SDF File 
Download CCD File 
A, B
(R)-(4-chloro-2-methoxy-3-{[4-(1H-pyrazol-1-yl)phenyl]methyl}quinolin-6-yl)(4-chlorophenyl)(1-methyl-1H-imidazol-5-yl)methanol
C31 H25 Cl2 N5 O2
UWOBQISTECYGOP-WJOKGBTCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.198 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.257 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 104.350α = 90.00
b = 104.323β = 90.00
c = 123.577γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-01-11 
  • Released Date: 2017-04-05 
  • Deposition Author(s): Spurlino, J., Abad, M.

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-04-26
    Type: Database references