5UHI

Structure of RORgt bound to


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.263 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Identification and structure activity relationships of quinoline tertiary alcohol modulators of ROR gamma t.

Kummer, D.A.Cummings, M.D.Abad, M.Barbay, J.Castro, G.Wolin, R.Kreutter, K.D.Maharoof, U.Milligan, C.Nishimura, R.Pierce, J.Schalk-Hihi, C.Spurlino, J.Urbanski, M.Venkatesan, H.Wang, A.Woods, C.Xue, X.Edwards, J.P.Fourie, A.M.Leonard, K.

(2017) Bioorg Med Chem Lett 27: 2047-2057

  • DOI: 10.1016/j.bmcl.2017.02.044
  • Primary Citation of Related Structures:  
    5UFO, 5UFR, 5UHI

  • PubMed Abstract: 
  • A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORγt) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions of the quinoline core using structure-activity relationships and structure-based drug design methods led to the discovery of a series of modulators with improved RORγt inhibitory potency and inverse agonism properties ...

    A high-throughput screen of the ligand binding domain of the nuclear receptor retinoic acid-related orphan receptor gamma t (RORγt) employing a thermal shift assay yielded a quinoline tertiary alcohol hit. Optimization of the 2-, 3- and 4-positions of the quinoline core using structure-activity relationships and structure-based drug design methods led to the discovery of a series of modulators with improved RORγt inhibitory potency and inverse agonism properties.


    Organizational Affiliation

    Discovery Immunology, Janssen Research and Development, Welsh and McKean Roads, Spring House, PA 19477, United States. Electronic address: kleonar1@its.jnj.com.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear receptor ROR-gammaA, B258Homo sapiensMutation(s): 0 
Gene Names: RORCNR1F3RORGRZRG
UniProt & NIH Common Fund Data Resources
Find proteins for P51449 (Homo sapiens)
Explore P51449 
Go to UniProtKB:  P51449
PHAROS:  P51449
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8A4
Query on 8A4

Download Ideal Coordinates CCD File 
C [auth A], D [auth B](R)-(4-chloro-2-methoxy-3-{[4-(1H-pyrazol-1-yl)phenyl]methyl}quinolin-6-yl)(4-chlorophenyl)(1-methyl-1H-imidazol-5-yl)methanol
C31 H25 Cl2 N5 O2
UWOBQISTECYGOP-WJOKGBTCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.263 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 104.35α = 90
b = 104.323β = 90
c = 123.577γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2017-01-11 
  • Released Date: 2017-04-05 
  • Deposition Author(s): Spurlino, J., Abad, M.

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-04-26
    Changes: Database references