5U6G

Crystal Structure of the holo Domain-Swapped Dimer mutant Q108K:K40D Human Cellular Retinol Binding Protein II bound with all trans retinal


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of the holo Domain-Swapped Dimer mutant Q108K:K40D Human Cellular Retinol Binding Protein II bound with all trans retinal

Assar, Z.Geiger, J.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Retinol-binding protein 2
A, B, C, D, H, E, F, J, K, L
133Homo sapiensMutation(s): 2 
Gene Names: RBP2 (CRBP2)
Find proteins for P50120 (Homo sapiens)
Go to Gene View: RBP2
Go to UniProtKB:  P50120
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Retinol-binding protein 2
G, I
133Homo sapiensMutation(s): 1 
Gene Names: RBP2 (CRBP2)
Find proteins for P50120 (Homo sapiens)
Go to Gene View: RBP2
Go to UniProtKB:  P50120
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RET
Query on RET

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, K, L
RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.177 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 65.474α = 90.00
b = 73.597β = 90.00
c = 351.601γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
PHENIXmodel building
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited States--

Revision History 

  • Version 1.0: 2017-10-18
    Type: Initial release