5TNV

Crystal Structure of a Xylose isomerase-like TIM barrel Protein from Mycobacterium smegmatis in Complex with Magnesium


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.137 
  • R-Value Observed: 0.116 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal Structure of a Xylose isomerase-like TIM barrel Protein from Mycobacterium smegmatis in Complex with Magnesium

Cook, W.J.Fedorov, A.A.Fedorov, E.V.Huang, H.Bonanno, J.B.Gerlt, J.A.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AP endonuclease, family protein 2A326Mycolicibacterium smegmatis MC2 155Mutation(s): 0 
Gene Names: MSMEG_6790MSMEI_6607
UniProt
Find proteins for A0R760 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Explore A0R760 
Go to UniProtKB:  A0R760
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0R760
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download Ideal Coordinates CCD File 
B [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.04 Å
  • R-Value Free: 0.137 
  • R-Value Observed: 0.116 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.869α = 90
b = 82.869β = 90
c = 125.218γ = 120
Software Package:
Software NamePurpose
SHELXLrefinement
MOSFLMdata reduction
SCALAdata scaling
SHELXCDphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-09
    Type: Initial release
  • Version 1.1: 2017-01-18
    Changes: Database references, Structure summary
  • Version 1.2: 2017-05-03
    Changes: Database references, Structure summary
  • Version 1.3: 2017-09-27
    Changes: Author supporting evidence
  • Version 1.4: 2019-12-25
    Changes: Author supporting evidence