5TFP

Crystal Structure of the SETDB2 Amino Terminal Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identification of a helical dimerization domain in SETDB2 lysine methyltransferase

Khorasanizadeh, S.Kim, Y.Osborne, T.F.Rastinejad, F.Potluri, N.Su, X.Roqueta-Rivera, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone-lysine N-methyltransferase SETDB2
A, B
64Homo sapiensMutation(s): 0 
Gene Names: SETDB2 (C13orf4, CLLD8, KMT1F)
EC: 2.1.1.-
Find proteins for Q96T68 (Homo sapiens)
Go to Gene View: SETDB2
Go to UniProtKB:  Q96T68
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
TLA
Query on TLA

Download SDF File 
Download CCD File 
B
L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.162 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 69.474α = 90.00
b = 69.474β = 90.00
c = 120.060γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data reduction
MLPHAREphasing
HKL-3000data collection
PDB_EXTRACTdata extraction
HKL-3000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-10-11
    Type: Initial release