5T2Q | pdb_00005t2q

Unliganded Human HVEM at 1.9A in P 1 21 1

• PDB DOI: https://doi.org/10.2210/pdb5T2Q/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2016-08-24 Released: 2018-10-24 
• Deposition Author(s): Nemcovicova, I., Zajonc, D.M.
• Funding Organization(s): Slovak Research and Development Agency, Scientific Grant Agency of the Slovak Republic, Marie Curie Action

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.288 (Depositor), 0.290 (DCC) 
• R-Value Work: 
  0.252 (Depositor), 0.260 (DCC) 
• R-Value Observed: 
  0.254 (Depositor) 

Starting Model: experimental

Literature

Unliganded Human HVEM at 1.9A in P 1 21 1

Nemcovicova, I., Zajonc, D.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 22.9 kDa 
• Atom Count: 1,581 
• Modeled Residue Count: 205 
• Deposited Residue Count: 216 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor necrosis factor receptor superfamily member 14	A, B	108	Homo sapiens	Mutation(s): 0  Gene Names: TNFRSF14, HVEA, HVEM, UNQ329/PRO509
UniProt & NIH Common Fund Data Resources
Find proteins for Q92956 (Homo sapiens) Explore Q92956  Go to UniProtKB:  Q92956
PHAROS:  Q92956 GTEx:  ENSG00000157873

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.288 (Depositor), 0.290 (DCC) 
• R-Value Work:  0.252 (Depositor), 0.260 (DCC) 
• R-Value Observed: 0.254 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.19	α = 90
b = 47.51	β = 106.69
c = 67.29	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-10-24 
Deposition Author(s): Nemcovicova, I., Zajonc, D.M.

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Funding Organization	Location	Grant Number
Slovak Research and Development Agency	Slovakia	APVV-14-0839
Scientific Grant Agency of the Slovak Republic	Slovakia	2/0103/15
Marie Curie Action	Slovakia	SASPRO-0003/01/02

Revision History  

• Version 1.0: 2018-10-24
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-11-06
  Changes: Structure summary