5T2Q | pdb_00005t2q

Unliganded Human HVEM at 1.9A in P 1 21 1

PDB DOI: https://doi.org/10.2210/pdb5T2Q/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2016-08-24 Released: 2018-10-24
Deposition Author(s): Nemcovicova, I., Zajonc, D.M.
Funding Organization(s): Slovak Research and Development Agency, Scientific Grant Agency of the Slovak Republic, Marie Curie Action

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.288 (Depositor), 0.294 (DCC)
R-Value Work:
0.252 (Depositor), 0.261 (DCC)
R-Value Observed:
0.254 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Unliganded Human HVEM at 1.9A in P 1 21 1

Nemcovicova, I., Zajonc, D.M.

To be published.

Macromolecule Content

Total Structure Weight: 22.9 kDa
Atom Count: 1,581
Modeled Residue Count: 205
Deposited Residue Count: 216
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tumor necrosis factor receptor superfamily member 14	A, B	108	Homo sapiens	Mutation(s): 0 Gene Names: TNFRSF14, HVEA, HVEM, UNQ329/PRO509
UniProt & NIH Common Fund Data Resources
Find proteins for Q92956 (Homo sapiens) Explore Q92956 Go to UniProtKB: Q92956
PHAROS: Q92956 GTEx: ENSG00000157873
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92956
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.288 (Depositor), 0.294 (DCC)
R-Value Work: 0.252 (Depositor), 0.261 (DCC)
R-Value Observed: 0.254 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.19	α = 90
b = 47.51	β = 106.69
c = 67.29	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2018-10-24

Deposition Author(s):

Nemcovicova, I.

Funding Organization	Location	Grant Number
Slovak Research and Development Agency	Slovakia	APVV-14-0839
Scientific Grant Agency of the Slovak Republic	Slovakia	2/0103/15
Marie Curie Action	Slovakia	SASPRO-0003/01/02

Revision History (Full details and data files)

Version 1.0: 2018-10-24
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.