Download MendeleyCrystal Structure of a COMT complex
Lerner, C., Jakob-Roetne, R., Groebke-Zbinden, K., Buettelmann, B., Rudolph, M.G.To be published.
5P9X
humanized rat catechol O-methyltransferase in complex with N-[1-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]propan-2-yl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide
- PDB DOI: https://doi.org/10.2210/pdb5P9X/pdb
- Deposition Group: G_1002014 ExploreG_1002014
- Classification: TRANSFERASE
- Organism(s): Rattus norvegicus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2016-10-19 Released: 2017-11-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.12 Å
- R-Value Free: 0.184
- R-Value Work: 0.160
- R-Value Observed: 0.161
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Catechol O-methyltransferase | A | 221 | Rattus norvegicus | Mutation(s): 2 Gene Names: Comt EC: 2.1.1.6 |  |
UniProt | |||||
Find proteins for P22734 (Rattus norvegicus) Explore P22734 Go to UniProtKB: P22734 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22734 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 7JO Query on 7JO | G [auth A] | N-[1-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]propan-2-yl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide C25 H25 F N6 O6 PQAIDYIFCYLFAS-RGJCZRFTSA-N |  | Ligand Interaction | |
| NHE Query on NHE | F [auth A] | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID C8 H17 N O3 S MKWKNSIESPFAQN-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CL Query on CL | C [auth A], D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.12 Å
- R-Value Free: 0.184
- R-Value Work: 0.160
- R-Value Observed: 0.161
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.964 | α = 90 |
| b = 54.087 | β = 90 |
| c = 80.776 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-11-22 Deposition Author(s): Ehler, A., Lerner, C., Rudolph, M.G.
Revision History (Full details and data files)
- Version 1.0: 2017-11-22
Type: Initial release - Version 1.1: 2018-02-21
Changes: Structure summary - Version 1.2: 2021-11-17
Changes: Database references, Derived calculations, Structure summary
