5OWJ

The dynamic dimer structure of the chaperone Trigger Factor (conformer 2)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The dynamic dimer structure of the chaperone Trigger Factor.

Morgado, L.Burmann, B.M.Sharpe, T.Mazur, A.Hiller, S.

(2017) Nat Commun 8: 1992-1992

  • DOI: https://doi.org/10.1038/s41467-017-02196-7
  • Primary Citation of Related Structures:  
    5OWI, 5OWJ

  • PubMed Abstract: 

    The chaperone Trigger Factor (TF) from Escherichia coli forms a dimer at cellular concentrations. While the monomer structure of TF is well known, the spatial arrangement of this dimeric chaperone storage form has remained unclear. Here, we determine its structure by a combination of high-resolution NMR spectroscopy and biophysical methods. TF forms a symmetric head-to-tail dimer, where the ribosome binding domain is in contact with the substrate binding domain, while the peptidyl-prolyl isomerase domain contributes only slightly to the dimer affinity. The dimer structure is highly dynamic, with the two ribosome binding domains populating a conformational ensemble in the center. These dynamics result from intermolecular in trans interactions of the TF client-binding site with the ribosome binding domain, which is conformationally frustrated in the absence of the ribosome. The avidity in the dimer structure explains how the dimeric state of TF can be monomerized also by weakly interacting clients.


  • Organizational Affiliation

    Biozentrum, University of Basel, Klingelbergstrasse 70, 4056, Basel, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Trigger factor
A, B
432Escherichia coliMutation(s): 0 
Gene Names: tigb0436JW0426
EC: 5.2.1.8
UniProt
Find proteins for P0A850 (Escherichia coli (strain K12))
Explore P0A850 
Go to UniProtKB:  P0A850
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A850
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland--
University of BaselSwitzerland--

Revision History  (Full details and data files)

  • Version 1.0: 2017-11-29
    Type: Initial release
  • Version 1.1: 2017-12-20
    Changes: Database references
  • Version 1.2: 2019-05-08
    Changes: Data collection