5O78 | pdb_00005o78

Crystal structure of Omp35 from Enterobacter aerogenes

PDB DOI: https://doi.org/10.2210/pdb5O78/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Klebsiella aerogenes
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No
Membrane Protein: Yes OPM PDBTM MemProtMD mpstruc

Deposited: 2017-06-08 Released: 2018-06-20
Deposition Author(s): Ferrara, L., Naismith, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free:
0.260 (Depositor), 0.262 (DCC)
R-Value Work:
0.214 (Depositor), 0.217 (DCC)
R-Value Observed:
0.216 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Omp35 from Enterobacter aerogenes

Ferrara, L., Naismith, J.

To be published.

Macromolecule Content

Total Structure Weight: 112.08 kDa
Atom Count: 7,765
Modeled Residue Count: 993
Deposited Residue Count: 1,011
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoporin PhoE	A, B, C	337	Klebsiella aerogenes	Mutation(s): 0 Gene Names: ASV18_23685, BXQ27_19200 Membrane Entity: Yes
UniProt
Find proteins for A0A0H3FYJ7 (Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)) Explore A0A0H3FYJ7 Go to UniProtKB: A0A0H3FYJ7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3FYJ7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free: 0.260 (Depositor), 0.262 (DCC)
R-Value Work: 0.214 (Depositor), 0.217 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.57	α = 90
b = 115.94	β = 90
c = 216.661	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Coot	model building
SCALA	data scaling
MOLREP	phasing
MOSFLM	data processing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-06-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-06-20
Type: Initial release
Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.