5O78 | pdb_00005o78

Crystal structure of Omp35 from Enterobacter aerogenes

• PDB DOI: https://doi.org/10.2210/pdb5O78/pdb

• Classification: MEMBRANE PROTEIN
• Organism(s): Klebsiella aerogenes
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 
• Membrane Protein: Yes  OPMPDBTMMemProtMDmpstruc


• Deposited: 2017-06-08 Released: 2018-06-20 
• Deposition Author(s): Ferrara, L., Naismith, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.85 Å
• R-Value Free: 
  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.214 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.216 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Omp35 from Enterobacter aerogenes

Ferrara, L., Naismith, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 112.08 kDa 
• Atom Count: 7,765 
• Modeled Residue Count: 993 
• Deposited Residue Count: 1,011 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoporin PhoE	A, B, C	337	Klebsiella aerogenes	Mutation(s): 0  Gene Names: ASV18_23685, BXQ27_19200 Membrane Entity: Yes
UniProt
Find proteins for A0A0H3FYJ7 (Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)) Explore A0A0H3FYJ7  Go to UniProtKB:  A0A0H3FYJ7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.85 Å
• R-Value Free:  0.260 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.214 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.216 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.57	α = 90
b = 115.94	β = 90
c = 216.661	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Coot	model building
SCALA	data scaling
MOLREP	phasing
MOSFLM	data processing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-06-20 
Deposition Author(s): Ferrara, L., Naismith, J.

Revision History  

• Version 1.0: 2018-06-20
  Type: Initial release
  
• Version 1.1: 2024-01-17
  Changes: Data collection, Database references, Refinement description