5NAN

Crystal Structure of human IL-17AF in complex with human IL-17RA

• PDB DOI: https://doi.org/10.2210/pdb5NAN/pdb

• Classification: CYTOKINE
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2017-02-28 Released: 2017-09-06 
• Deposition Author(s): Rondeau, J.-M., Goepfert, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.243 
• R-Value Work: 0.186 
• R-Value Observed: 0.189 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A2B1 

Biological assembly 1 generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A2B1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 135.78 kDa 
• Atom Count: 7,923 
• Modelled Residue Count: 972 
• Deposited Residue Count: 1,164 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-17A	A, D	132	Homo sapiens	Mutation(s): 0  Gene Names: IL17A, CTLA8, IL17
UniProt & NIH Common Fund Data Resources
Find proteins for Q16552 (Homo sapiens) Explore Q16552  Go to UniProtKB:  Q16552
PHAROS:  Q16552 GTEx:  ENSG00000112115

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-17 receptor A	B, C	311	Homo sapiens	Mutation(s): 0  Gene Names: IL17RA, IL17R
UniProt & NIH Common Fund Data Resources
Find proteins for Q96F46 (Homo sapiens) Explore Q96F46  Go to UniProtKB:  Q96F46
PHAROS:  Q96F46 GTEx:  ENSG00000177663

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-17F	E, F	139	Homo sapiens	Mutation(s): 0  Gene Names: IL17F
UniProt & NIH Common Fund Data Resources
Find proteins for Q96PD4 (Homo sapiens) Explore Q96PD4  Go to UniProtKB:  Q96PD4
PHAROS:  Q96PD4 GTEx:  ENSG00000112116

Oligosaccharides

Help

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-D-galactopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	G	3		N-Glycosylation
Glycosylation Resources
GlyTouCan:  G49445EF GlyCosmos:  G49445EF GlyGen:  G49445EF

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	H [auth B], I [auth C], J [auth C], K [auth C], L [auth E]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.30 Å
• R-Value Free: 0.243 
• R-Value Work: 0.186 
• R-Value Observed: 0.189 
• Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 100.002	α = 90
b = 66.103	β = 90.13
c = 104.119	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
BUSTER	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-09-06 
Deposition Author(s): Rondeau, J.-M., Goepfert, A.

Revision History  

• Version 1.0: 2017-09-06
  Type: Initial release
  
• Version 1.1: 2017-09-13
  Changes: Structure summary
• Version 1.2: 2017-09-20
  Changes: Database references
• Version 1.3: 2018-01-24
  Changes: Source and taxonomy
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Derived calculations, Structure summary
• Version 2.1: 2024-01-17
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary