5K1Y

P2(1) Structure of pNOB8 AspA-DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Detailed structural analysis of AspA-DNA contacts

Schumacher, M.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
AspAC [auth A], D [auth B], A [auth C], B [auth D], G [auth E], H [auth F]92Sulfolobus sp. NOB8H2Mutation(s): 0 
UniProt
Find proteins for O93706 (Sulfolobus sp. NOB8H2)
Explore O93706 
Go to UniProtKB:  O93706
Protein Feature View
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
DNA (33-MER)E [auth P]33synthetic construct
Protein Feature View
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsLengthOrganismImage
DNA (33-MER)F [auth N]33synthetic construct
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.217 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.366α = 90
b = 72.306β = 114.72
c = 90.508γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

  • Deposited Date: 2016-05-18 
  • Released Date: 2016-06-15 
  • Deposition Author(s): Schumacher, M.
  • This entry supersedes: 4RU7, 5FC0

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-15
    Type: Initial release
  • Version 1.1: 2016-08-17
    Changes: Other
  • Version 1.2: 2019-02-06
    Changes: Data collection, Derived calculations, Source and taxonomy