Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 48389.12 
• Atom Count: 2649 
• Residue Count: 421 
• Unique protein chains: 1

5JUW

complex of Dot1l with SS148

• DOI: 10.2210/pdb5JUW/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2016-05-10 Released: 2016-06-22 
• Deposition Author(s): Yu, W., Tempel, W., Li, Y., Spurr, S.S., Bayle, E.D., Fish, P.V., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Brown, P.J., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 0.215 
• R-Value Work: 0.189 

Literature

Complex of Dot1l with SS148

Yu, W., Tempel, W., Li, Y., Spurr, S.S., Bayle, E.D., Fish, P.V., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Brown, P.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Histone-lysine N-methyltransferase, H3 lysine-79 specific	A	421	Homo sapiens	Mutation(s): 0  Gene Names: DOT1L (KIAA1814, KMT4) EC: 2.1.1.43
Find proteins for Q8TEK3 (Homo sapiens) Go to Gene View: DOT1L Go to UniProtKB:  Q8TEK3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
UNX	A	UNKNOWN ATOM OR ION X *
6NR	A	(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid C16 H20 N6 O5 S XLTWYAYAFLGUEQ-OPYVMVOTSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.28 Å
• R-Value Free: 0.215 
• R-Value Work: 0.189 
• Space Group: P 6₅
• Diffraction Data DOI: 
  10.18430/M35JUW Protein Diffraction

Unit Cell:

Length (Å)	Angle (°)
a = 153.258	α = 90.00
b = 153.258	β = 90.00
c = 50.723	γ = 120.00

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
REFMAC	phasing
XDS	data reduction
REFMAC	refinement
Aimless	data scaling

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2016-05-10 
• Released Date: 2016-06-22 
• Deposition Author(s): Yu, W., Tempel, W., Li, Y., Spurr, S.S., Bayle, E.D., Fish, P.V., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Brown, P.J., Structural Genomics Consortium (SGC)

Revision History 

• Version 1.0: 2016-06-22
  Type: Initial release