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complex of Dot1l with SS148
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UWP pdb entry 3uwp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 1.5 M ammonium sulfate, 0.1 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 3.58 65.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.258 α = 90 b = 153.258 β = 90 c = 50.723 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792912 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 47.38 100 0.09 0.999 23.2 12.4 31441
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36 100 0.977 1.018 0.287 0.856 3.1 12.5 3064
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT pdb entry 3uwp 2.28 47 29903 1516 99.96 0.1899 0.1886 0.2025 0.2153 0.2276 46.253
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.33 -0.65 2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.606 r_dihedral_angle_4_deg 17.078 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 6.02 r_mcangle_it 3.304 r_mcbond_it 2.116 r_mcbond_other 2.116 r_angle_refined_deg 1.483 r_angle_other_deg 0.967 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.606 r_dihedral_angle_4_deg 17.078 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 6.02 r_mcangle_it 3.304 r_mcbond_it 2.116 r_mcbond_other 2.116 r_angle_refined_deg 1.483 r_angle_other_deg 0.967 r_chiral_restr 0.09 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2528 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction REFMAC phasing