5JR0 | pdb_00005jr0

Domain 4 Segment 6 of voltage-gated sodium channel Nav1.4

PDB DOI: https://doi.org/10.2210/pdb5JR0/pdb
BMRB: 30076

Classification: METAL BINDING PROTEIN
Organism(s): Rattus norvegicus
Mutation(s): Yes
Membrane Protein: Yes OPM PDBTM MemProtMD

Deposited: 2016-05-05 Released: 2017-05-17
Deposition Author(s): Niitsu, A., Egawa, A., Ikeda, K., Tachibana, K., Fujiwara, T.
Funding Organization(s): Japan Society for the Promotion of Science

Experimental Data Snapshot

Method: SOLID-STATE NMR
Conformers Calculated: 1000
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

Validation slider image for 5JR0

This is version 1.1 of the entry. See complete history.

Literature

Veratridine binding to a transmembrane segment of mammalian sodium channel Nav1.4 determined by solid-state NMR

Niitsu, A., Egawa, A., Ikeda, K., Tachibana, K., Fujiwara, T.

To be published.

Macromolecule Content

Total Structure Weight: 4.03 kDa
Atom Count: 283
Modeled Residue Count: 35
Deposited Residue Count: 35
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium channel protein type 4 subunit alpha	A	35	Rattus norvegicus	Mutation(s): 1 Membrane Entity: Yes
UniProt
Find proteins for P15390 (Rattus norvegicus) Explore P15390 Go to UniProtKB: P15390
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P15390
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLID-STATE NMR
Conformers Calculated: 1000
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2017-05-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science	Japan	--

Revision History (Full details and data files)

Version 1.0: 2017-05-17
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.