5JJD

crystal structure of the ceramide transfer protein PH and START domain complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.403 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Interaction between the PH and START domains of ceramide transfer protein competes with phosphatidylinositol 4-phosphate binding by the PH domain.

Prashek, J.Bouyain, S.Fu, M.Li, Y.Berkes, D.Yao, X.

(2017) J. Biol. Chem. 292: 14217-14228


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Collagen type IV alpha-3-binding protein
A
106Homo sapiensMutation(s): 0 
Gene Names: COL4A3BP (CERT, STARD11)
Find proteins for Q9Y5P4 (Homo sapiens)
Go to Gene View: COL4A3BP
Go to UniProtKB:  Q9Y5P4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Collagen type IV alpha-3-binding protein
B
246Homo sapiensMutation(s): 0 
Gene Names: COL4A3BP (CERT, STARD11)
Find proteins for Q9Y5P4 (Homo sapiens)
Go to Gene View: COL4A3BP
Go to UniProtKB:  Q9Y5P4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PGE
Query on PGE

Download SDF File 
Download CCD File 
B
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.403 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.201 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 59.761α = 90.00
b = 60.914β = 90.00
c = 95.804γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States1 R15 GM113200-01

Revision History 

  • Version 1.0: 2017-07-05
    Type: Initial release
  • Version 1.1: 2017-09-13
    Type: Author supporting evidence
  • Version 1.2: 2019-01-16
    Type: Data collection, Database references