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Download EndnoteStructure of Lys27-linked triubiquitin
Pan, M., Gao, S., Zheng, Y.To be published.
5JBV
Lys27-linked triubiquitin
- DOI: 10.2210/pdb5JBV/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Deposited: 2016-04-13 Released: 2016-05-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.104 Å
- R-Value Free: 0.306
- R-Value Work: 0.261
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Ubiquitin | A | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBA52 (UBCEP2) |
Find proteins for P62987 (Homo sapiens) Go to Gene View: UBA52 Go to UniProtKB: P62987 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-ubiquitin | B | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBA52 (UBCEP2) |
Find proteins for P62987 (Homo sapiens) Go to Gene View: UBA52 Go to UniProtKB: P62987 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NO3 Query on NO3 | A, B | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 17 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| DIL Query on DIL | B | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DNE Query on DNE | B | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DPR Query on DPR | B | D-PEPTIDE LINKING | C5 H9 N O2 |  | -- |
| DLY Query on DLY | B | D-PEPTIDE LINKING | C6 H14 N2 O2 |  | -- |
| DHI Query on DHI | B | D-PEPTIDE LINKING | C6 H10 N3 O2 |  | -- |
| DSN Query on DSN | B | D-PEPTIDE LINKING | C3 H7 N O3 |  | -- |
| DVA Query on DVA | B | D-PEPTIDE LINKING | C5 H11 N O2 |  | -- |
| DTH Query on DTH | B | D-PEPTIDE LINKING | C4 H9 N O3 |  | -- |
| DLE Query on DLE | B | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DGL Query on DGL | B | D-PEPTIDE LINKING | C5 H9 N O4 |  | -- |
| DAL Query on DAL | B | D-PEPTIDE LINKING | C3 H7 N O2 |  | -- |
| DPN Query on DPN | B | D-PEPTIDE LINKING | C9 H11 N O2 |  | -- |
| DGN Query on DGN | B | D-PEPTIDE LINKING | C5 H10 N2 O3 |  | -- |
| DAS Query on DAS | B | D-PEPTIDE LINKING | C4 H7 N O4 |  | -- |
| DSG Query on DSG | B | D-PEPTIDE LINKING | C4 H8 N2 O3 |  | -- |
| DTY Query on DTY | B | D-PEPTIDE LINKING | C9 H11 N O3 |  | -- |
| DAR Query on DAR | B | D-PEPTIDE LINKING | C6 H15 N4 O2 |  | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.104 Å
- R-Value Free: 0.306
- R-Value Work: 0.261
- Space Group: H 3
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 51.758 | α = 90.00 |
| b = 51.758 | β = 90.00 |
| c = 138.252 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
