Download MendeleyStructure of Lys27-linked triubiquitin
Pan, M., Gao, S., Zheng, Y.To be published.
5JBV
Lys27-linked triubiquitin
- PDB DOI: https://doi.org/10.2210/pdb5JBV/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Mutation(s): No
- Deposited: 2016-04-13 Released: 2016-05-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.306
- R-Value Work: 0.261
- R-Value Observed: 0.263
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin | A | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBA52, UBCEP2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62987 (Homo sapiens) Explore P62987 Go to UniProtKB: P62987 | |||||
PHAROS: P62987 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62987 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| D-ubiquitin | B | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBA52, UBCEP2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62987 (Homo sapiens) Explore P62987 Go to UniProtKB: P62987 | |||||
PHAROS: P62987 | |||||
Entity Groups | |||||
| UniProt Group | P62987 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NO3 Query on NO3 | C [auth A], D [auth B] | NITRATE ION N O3 NHNBFGGVMKEFGY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.306
- R-Value Work: 0.261
- R-Value Observed: 0.263
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.758 | α = 90 |
| b = 51.758 | β = 90 |
| c = 138.252 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
Entry History
Revision History (Full details and data files)
- Version 1.0: 2016-05-18
Type: Initial release - Version 1.1: 2017-10-04
Changes: Data collection, Derived calculations - Version 1.2: 2022-02-09
Changes: Database references
