Download MendeleyA C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
Kono, R., Watanabe, K.To be published.
5INX
A C69-family cysteine dipeptidase in complex with Met and Ala from Lactobacillus farciminis
- PDB DOI: https://doi.org/10.2210/pdb5INX/pdb
- Classification: HYDROLASE
- Organism(s): Companilactobacillus farciminis KCTC 3681 = DSM 20184
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-03-08 Released: 2017-03-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.180
- R-Value Work: 0.158
- R-Value Observed: 0.160
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dipeptidase | 469 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 | Mutation(s): 0 Gene Names: FC68_GL001211 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MET Query on MET | F [auth A], H [auth B], J [auth C], L [auth D], N [auth E] | METHIONINE C5 H11 N O2 S FFEARJCKVFRZRR-BYPYZUCNSA-N |  | ||
| ALA Query on ALA | G [auth A], I [auth B], K [auth C], M [auth D], O [auth E] | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.180
- R-Value Work: 0.158
- R-Value Observed: 0.160
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 167.65 | α = 90 |
| b = 182.415 | β = 112.75 |
| c = 98.215 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2017-03-15 Deposition Author(s): Kono, R., Watanabe, K.
Revision History (Full details and data files)
- Version 1.0: 2017-03-15
Type: Initial release - Version 1.1: 2020-02-19
Changes: Data collection - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description
