A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
Kono, R., Watanabe, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dipeptidase | 469 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 | Mutation(s): 0  Gene Names: FC68_GL001211 | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MET Query on MET | F [auth A], H [auth B], J [auth C], L [auth D], N [auth E] | METHIONINE C5 H11 N O2 S FFEARJCKVFRZRR-BYPYZUCNSA-N | |||
ALA Query on ALA | G [auth A], I [auth B], K [auth C], M [auth D], O [auth E] | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 167.65 | α = 90 |
b = 182.415 | β = 112.75 |
c = 98.215 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data collection |
HKL-2000 | data scaling |
MOLREP | phasing |