5IEL | pdb_00005iel

Structure of Lysozyme labeled with fluorescein isothiocyanate (FITC) at 1.15 Angstroms resolution

• PDB DOI: https://doi.org/10.2210/pdb5IEL/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus
• Mutation(s): No 


• Deposited: 2016-02-25 Released: 2017-03-08 
• Deposition Author(s): Kachalova, G.S., Vlaskina, A.V., Popov, A.P., Simanovskaia, A.A., Krukova, M.V., Lipkin, A.V.
• Funding Organization(s): Russian Fund of Fundamental Reasearch

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.15 Å
• R-Value Free: 
  0.176 (Depositor), 0.176 (DCC) 
• R-Value Work: 
  0.148 (Depositor), 0.148 (DCC) 
• R-Value Observed: 
  0.149 (Depositor) 

Starting Model: experimental

Literature

Structure of Lysozyme labeled with fluorescein isothiocyanate (FITC) at 1.15 Angstroms resolution

Kachalova, G.S., Vlaskina, A.V., Popov, A.P., Simanovskaia, A.A., Krukova, M.V., Lipkin, A.V.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 14.72 kDa 
• Atom Count: 1,271 
• Modeled Residue Count: 129 
• Deposited Residue Count: 129 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698  Go to UniProtKB:  P00698

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
6B9	B [auth A]	2-(6-hydroxy-3-oxo-3H-xanthen-9-yl)-5-[(E)-(sulfanylmethylidene)amino]benzoic acid C21 H13 N O5 S KDFRZGWCOSXMPY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.15 Å
• R-Value Free:  0.176 (Depositor), 0.176 (DCC) 
• R-Value Work:  0.148 (Depositor), 0.148 (DCC) 
• R-Value Observed: 0.149 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.756	α = 90
b = 80.756	β = 90
c = 36.561	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2017-03-08 
Deposition Author(s): Kachalova, G.S., Vlaskina, A.V., Popov, A.P., Simanovskaia, A.A., Krukova, M.V., Lipkin, A.V.

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Funding Organization	Location	Grant Number
Russian Fund of Fundamental Reasearch	Russian Federation	13-04-12084

Revision History  

• Version 1.0: 2017-03-08
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-10-23
  Changes: Structure summary