5GYM

Crystal structure of RXR-LBD complexed with fluorescent ligand at 2.60 angstroms resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.333 
  • R-Value Work: 0.310 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of RXR-LBD complexed with fluorescent ligand at 2.60 angstroms resolution.

Nakano, S.Yamada, S.Okazaki, S.Kakuta, H.Tokiwa, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Retinoic acid receptor RXR-alpha
A, B, C, D, E, F, G, H
257Homo sapiensMutation(s): 0 
Gene Names: RXRA (NR2B1)
Find proteins for P19793 (Homo sapiens)
Go to Gene View: RXRA
Go to UniProtKB:  P19793
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
WY5
Query on WY5

Download SDF File 
Download CCD File 
A, C, D, G
7-oxidanyl-2-oxidanylidene-6-(3,5,5,8,8-pentamethyl-6,7-dihydronaphthalen-2-yl)chromene-3-carboxylic acid
C25 H26 O5
UYPOSIGCFZMVDD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.333 
  • R-Value Work: 0.310 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 93.890α = 90.00
b = 99.595β = 104.83
c = 112.495γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PDB_EXTRACTdata extraction
MOLREPphasing
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-11-01
    Type: Initial release