5GST

REACTION COORDINATE MOTION IN AN SNAR REACTION CATALYZED BY GLUTATHIONE TRANSFERASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Observed: 0.192 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Snapshots along the reaction coordinate of an SNAr reaction catalyzed by glutathione transferase.

Ji, X.Armstrong, R.N.Gilliland, G.L.

(1993) Biochemistry 32: 12949-12954

  • DOI: 10.1021/bi00211a001
  • Primary Citation of Related Structures:  
    4GST, 5GST

  • PubMed Abstract: 
  • The three-dimensional structures of a class mu glutathione transferase in complex with a transition-state analogue, 1-(S-glutathionyl)-2,4,6-trinitrocyclohexadienate, and a product, 1-(S-glutathionyl)-2,4-dinitrobenzene, of a nucleophilic aromatic substitution (SNAr) reaction have been determined at 1 ...

    The three-dimensional structures of a class mu glutathione transferase in complex with a transition-state analogue, 1-(S-glutathionyl)-2,4,6-trinitrocyclohexadienate, and a product, 1-(S-glutathionyl)-2,4-dinitrobenzene, of a nucleophilic aromatic substitution (SNAr) reaction have been determined at 1.9- and 2.0-A resolution, respectively. The two structures represent snapshots along the reaction coordinate for the enzyme-catalyzed reaction of glutathione with 1-chloro-2,4-dinitrobenzene and reveal specific interactions between the enzyme, intermediate, and product that are important in catalysis. The geometries of the intermediate and product are used to postulate reaction coordinate motion during catalysis.


    Related Citations: 
    • Tyrosine 115 Participates Both in Chemical and Physical Steps of the Catalytic Mechanism of a Glutathione S-Transferase
      Johnson, W.W., Liu, S., Ji, X., Gilliland, G.L., Armstrong, R.N.
      (1993) J Biol Chem 268: 11508
    • Contribution of Tyrosine 6 to the Catalytic Mechanism of Isoenzyme 3-3 of Glutathione S-Transferase
      Liu, S., Zhang, P., Ji, X., Johnson, W.W., Gilliland, G.L., Armstrong, R.N.
      (1992) J Biol Chem 267: 4296
    • The Three-Dimensional Structure of a Glutathione S-Transferase from the Mu Gene Class. Structural Analysis of the Binary Complex of Isoenzyme 3-3 and Glutathione at 2.2 Angstroms Resolution
      Ji, X., Zhang, P., Armstrong, R.N., Gilliland, G.L.
      (1992) Biochemistry 31: 10169

    Organizational Affiliation

    Department of Chemistry and Biochemistry, University of Maryland, College Park 20742.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
GLUTATHIONE S-TRANSFERASEA, B217Rattus rattusMutation(s): 0 
EC: 2.5.1.18
UniProt
Find proteins for P04905 (Rattus norvegicus)
Explore P04905 
Go to UniProtKB:  P04905
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04905
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDN
Query on GDN

Download Ideal Coordinates CCD File 
D [auth A],
E [auth B]
GLUTATHIONE S-(2,4 DINITROBENZENE)
C16 H19 N5 O10 S
FXEUKVKGTKDDIQ-UWVGGRQHSA-N
 Ligand Interaction
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A]SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Observed: 0.192 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.24α = 90
b = 69.44β = 106.01
c = 81.28γ = 90
Software Package:
Software NamePurpose
GPRLSArefinement

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1993-10-31
    Type: Initial release
  • Version 1.1: 2008-03-25
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other