4GST

REACTION COORDINATE MOTION IN AN SNAR REACTION CATALYZED BY GLUTATHIONE TRANSFERASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Snapshots along the reaction coordinate of an SNAr reaction catalyzed by glutathione transferase.

Ji, X.Armstrong, R.N.Gilliland, G.L.

(1993) Biochemistry 32: 12949-12954

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The three-dimensional structures of a class mu glutathione transferase in complex with a transition-state analogue, 1-(S-glutathionyl)-2,4,6-trinitrocyclohexadienate, and a product, 1-(S-glutathionyl)-2,4-dinitrobenzene, of a nucleophilic aromatic su ...

    The three-dimensional structures of a class mu glutathione transferase in complex with a transition-state analogue, 1-(S-glutathionyl)-2,4,6-trinitrocyclohexadienate, and a product, 1-(S-glutathionyl)-2,4-dinitrobenzene, of a nucleophilic aromatic substitution (SNAr) reaction have been determined at 1.9- and 2.0-A resolution, respectively. The two structures represent snapshots along the reaction coordinate for the enzyme-catalyzed reaction of glutathione with 1-chloro-2,4-dinitrobenzene and reveal specific interactions between the enzyme, intermediate, and product that are important in catalysis. The geometries of the intermediate and product are used to postulate reaction coordinate motion during catalysis.


    Related Citations: 
    • Tyrosine 115 Participates Both in Chemical and Physical Steps of the Catalytic Mechanism of a Glutathione S-Transferase
      Johnson, W.W.,Liu, S.,Ji, X.,Gilliland, G.L.,Armstrong, R.N.
      (1993) J.Biol.Chem. 268: 11508
    • Contribution of Tyrosine 6 to the Catalytic Mechanism of Isoenzyme 3-3 of Glutathione S-Transferase
      Liu, S.,Zhang, P.,Ji, X.,Johnson, W.W.,Gilliland, G.L.,Armstrong, R.N.
      (1992) J.Biol.Chem. 267: 4296
    • The Three-Dimensional Structure of a Glutathione S-Transferase from the Mu Gene Class. Structural Analysis of the Binary Complex of Isoenzyme 3-3 and Glutathione at 2.2 Angstroms Resolution
      Ji, X.,Zhang, P.,Armstrong, R.N.,Gilliland, G.L.
      (1992) Biochemistry 31: 10169


    Organizational Affiliation

    Department of Chemistry and Biochemistry, University of Maryland, College Park 20742.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
GLUTATHIONE S-TRANSFERASE
A, B
217Rattus norvegicusMutation(s): 0 
Gene Names: Gstm1
EC: 2.5.1.18
Find proteins for P04905 (Rattus norvegicus)
Go to UniProtKB:  P04905
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GTD
Query on GTD

Download SDF File 
Download CCD File 
A, B
1-(S-GLUTATHIONYL)-2,4,6-TRINITROCYCLOHEXA-2,5-DIENE
(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-1-OXO-3-(2,4,6-TRINITROCYCLOHEXA-2,5-DIENYLTHIO)PROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID
C16 H20 N6 O12 S
VQUXYLXGOSJDJJ-OSGJSWLFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 88.240α = 90.00
b = 69.440β = 106.01
c = 81.280γ = 90.00
Software Package:
Software NamePurpose
GPRLSArefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1993-10-31
    Type: Initial release
  • Version 1.1: 2008-03-25
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-11-29
    Type: Derived calculations, Other