5FT8

Crystal structure of the complex between the cysteine desulfurase CsdA and the sulfur-acceptor CsdE in the persulfurated state at 2.50 Angstroem resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.254 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System

Fernandez, F.J.Arda, A.Lopez-Estepa, M.Aranda, J.Penya-Soler, E.Garces, F.Quintana, J.F.Round, A.Campos-Oliva, R.Bruix, M.Coll, M.Tunon, I.Jimenez-Barbero, J.Vega, M.C.

(2016) Acs Catalysis 6: 3975


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CYSTEINE DESULFURASE CSDA
A, C, E, G, I, K, M, O
403Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: csdA (ygdJ)
EC: 2.8.1.7
Find proteins for Q46925 (Escherichia coli (strain K12))
Go to UniProtKB:  Q46925
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
SULFUR ACCEPTOR PROTEIN CSDE
B, D, F, H, J, L, N, P
154Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: csdE (ygdK)
Find proteins for P0AGF2 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AGF2
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B, C, D, E, G, H, I, M
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CSS
Query on CSS

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Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
S-MERCAPTOCYSTEINE
C3 H7 N O2 S2
XBKONSCREBSMCS-REOHCLBHSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A, B, C, E, G, H, I, K
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
PLP
Query on PLP

Download SDF File 
Download CCD File 
A, C, E, G, I, K, M, O
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.254 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 74.863α = 90.00
b = 115.135β = 90.00
c = 604.966γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-11-23
    Type: Initial release
  • Version 1.1: 2019-01-02
    Type: Data collection, Database references, Structure summary