Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 24641.98 
• Atom Count: 1728 
• Residue Count: 218 
• Unique protein chains: 1

5F71

Human T-cell immunoglobulin and mucin domain protein 3 (hTIM-3)

• DOI: 10.2210/pdb5F71/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Escherichia coli


• Deposited: 2015-12-07 Released: 2016-02-03 
• Deposition Author(s): Gao, G.F., Lu, G., Wang, H., Qi, J.
• Funding Organization(s): National Natural Science Foundation of China; Strategic Priority Research Program of the Chinese Academy of Sciences 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.404 Å
• R-Value Free: 0.257 
• R-Value Work: 0.215 

Literature

Crystal structures of human TIM members: Ebolavirus entry-enhancing receptors

Wang, H., Qi, J.X., Liu, N.N.

(2015) Chin.Sci.Bull. 60: 3438-3453

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Hepatitis A virus cellular receptor 2	A, B	109	Homo sapiens	Mutation(s): 0  Gene Names: HAVCR2 (TIM3, TIMD3)
Find proteins for Q8TDQ0 (Homo sapiens) Go to Gene View: HAVCR2 Go to UniProtKB:  Q8TDQ0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NA	A, B	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.404 Å
• R-Value Free: 0.257 
• R-Value Work: 0.215 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 53.997	α = 90.00
b = 61.957	β = 90.00
c = 67.152	γ = 90.00

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data scaling
HKL-2000	data processing
PHASER	phasing
HKL-2000	data reduction
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2015-12-07 
• Released Date: 2016-02-03 
• Deposition Author(s): Gao, G.F., Lu, G., Wang, H., Qi, J.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	81590761
Strategic Priority Research Program of the Chinese Academy of Sciences	China	XDB08020100

Revision History 

• Version 1.0: 2016-02-03
  Type: Initial release
• Version 1.1: 2017-02-08
  Type: Source and taxonomy