5F71

Human T-cell immunoglobulin and mucin domain protein 3 (hTIM-3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.404 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structures of human TIM members: Ebolavirus entry-enhancing receptors

Wang, H.Qi, J.X.Liu, N.N.

(2015) Chin.Sci.Bull. 60: 3438-3453


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hepatitis A virus cellular receptor 2
A, B
109Homo sapiensMutation(s): 0 
Gene Names: HAVCR2 (TIM3, TIMD3)
Find proteins for Q8TDQ0 (Homo sapiens)
Go to Gene View: HAVCR2
Go to UniProtKB:  Q8TDQ0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.404 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.215 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 53.997α = 90.00
b = 61.957β = 90.00
c = 67.152γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
HKL-2000data processing
PHASERphasing
HKL-2000data reduction
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81590761
Strategic Priority Research Program of the Chinese Academy of SciencesChinaXDB08020100

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release
  • Version 1.1: 2017-02-08
    Type: Source and taxonomy