5F71

Human T-cell immunoglobulin and mucin domain protein 3 (hTIM-3)

  • Classification: IMMUNE SYSTEM
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2015-12-07 Released: 2016-02-03 
  • Deposition Author(s): Gao, G.F., Lu, G., Wang, H., Qi, J.
  • Funding Organization(s): National Natural Science Foundation of China, Strategic Priority Research Program of the Chinese Academy of Sciences

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structures of human TIM members: Ebolavirus entry-enhancing receptors

Wang, H.Qi, J.X.Liu, N.N.

(2015) Chin Sci Bull 60: 3438-3453


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Hepatitis A virus cellular receptor 2 AB109Homo sapiensMutation(s): 0 
Gene Names: TIMD3HAVCR2TIM3
Find proteins for Q8TDQ0 (Homo sapiens)
Explore Q8TDQ0 
Go to UniProtKB:  Q8TDQ0
NIH Common Fund Data Resources
PHAROS:  Q8TDQ0
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download Ideal Coordinates CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.215 
  • R-Value Observed: 0.217 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.997α = 90
b = 61.957β = 90
c = 67.152γ = 90
Software Package:
Software NamePurpose
HKL-2000data processing
SCALEPACKdata scaling
PHASERphasing
Cootmodel building
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81590761
Strategic Priority Research Program of the Chinese Academy of SciencesChinaXDB08020100

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release
  • Version 1.1: 2017-02-08
    Changes: Source and taxonomy