5F0G

Structure of the glutathione transferase delta 2 from Drosophila melanogaster


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.174 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Characterization of a Drosophila glutathione transferase involved in isothiocyanate detoxification.

Gonzalez, D.Fraichard, S.Grassein, P.Delarue, P.Senet, P.Nicolai, A.Chavanne, E.Mucher, E.Artur, Y.Ferveur, J.F.Heydel, J.M.Briand, L.Neiers, F.

(2018) Insect Biochem Mol Biol 95: 33-43

  • DOI: https://doi.org/10.1016/j.ibmb.2018.03.004
  • Primary Citation of Related Structures:  
    5F0G

  • PubMed Abstract: 

    Glutathione transferases (GSTs) are ubiquitous key enzymes that catalyse the conjugation of glutathione to xenobiotic compounds in the detoxification process. GSTs have been proposed to play a dual role in the signal termination of insect chemodetection by modifying odorant and tasting molecules and by protecting the chemosensory system. Among the 40 GSTs identified in Drosophila melanogaster, the Delta and Epsilon groups are insect-specific. GSTs Delta and Epsilon may have evolved to serve in detoxification, and have been associated with insecticide resistance. Here, we report the heterologous expression and purification of the D. melanogaster GST Delta 2 (GSTD2). We investigated the capacity of GSTD2 to bind tasting molecules. Among them, we found that isothiocyanates (ITC), insecticidal compounds naturally present in cruciferous plant and perceived as bitter, are good substrates for GSTD2. The X-ray structure of GSTD2 was solved, showing the absence of the classical Ser catalytic residue, conserved in the Delta and Epsilon GSTs. Using molecular dynamics, the interaction of ITC with the GSTD2 three-dimensional structure is analysed and discussed. These findings allow us to consider a biological role for GSTD2 in chemoperception, considering GSTD2 expression in the chemosensory organs and the potential consequences of insect exposure to ITC.


  • Organizational Affiliation

    Centre des Sciences du Goût et de l'Alimentation (CSGA), Université de Bourgogne Franche-Comté, INRA, CNRS, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase D2
A, B
215Drosophila melanogasterMutation(s): 0 
Gene Names: GstD2GSTD2-2gstD21CG4181
EC: 2.5.1.18
UniProt
Find proteins for Q9VG98 (Drosophila melanogaster)
Explore Q9VG98 
Go to UniProtKB:  Q9VG98
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VG98
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.174 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.5α = 90
b = 87.5β = 113.9
c = 53.2γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Cootmodel building
XDSdata reduction
PHASERphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2018-04-11
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2018-07-11
    Changes: Data collection, Database references
  • Version 1.3: 2024-01-10
    Changes: Data collection, Database references, Derived calculations, Refinement description