5F0G

Structure of the glutathione transferase delta 2 from Drosophila melanogaster


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Characterization of a Drosophila glutathione transferase involved in isothiocyanate detoxification.

Gonzalez, D.Fraichard, S.Grassein, P.Delarue, P.Senet, P.Nicolai, A.Chavanne, E.Mucher, E.Artur, Y.Ferveur, J.F.Heydel, J.M.Briand, L.Neiers, F.

(2018) Insect Biochem. Mol. Biol. 95: 33-43


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glutathione S-transferase D2
A, B
215Drosophila melanogasterMutation(s): 0 
Gene Names: GstD2 (GSTD2-2, gstD21)
EC: 2.5.1.18
Find proteins for Q9VG98 (Drosophila melanogaster)
Go to UniProtKB:  Q9VG98
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
B
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.172 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 47.500α = 90.00
b = 87.500β = 113.90
c = 53.200γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
XDSdata reduction
XSCALEdata scaling
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2018-04-11
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-07-11
    Type: Data collection, Database references