Download MendeleyCrystal structure of putative aspartate racemase from Salmonella Typhimurium complexed with sulfate and potassium
Maltseva, N., Kim, Y., Stam, J., Anderson, W.F., Joachimiak, A.To be published.
5EVC
Crystal structure of putative aspartate racemase from Salmonella Typhimurium complexed with sulfate and potassium
- PDB DOI: https://doi.org/10.2210/pdb5EVC/pdb
- Classification: ISOMERASE
- Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2015-11-19 Released: 2015-12-02
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.157
- R-Value Work: 0.135
- R-Value Observed: 0.137
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative aspartate racemase | 268 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0 Gene Names: STM4510 |  | |
UniProt | |||||
Find proteins for Q8ZJZ9 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZJZ9 Go to UniProtKB: Q8ZJZ9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZJZ9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], J [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | F [auth A], L [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | G [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| K Query on K | C [auth A], E [auth A], I [auth B], M [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| F Query on F | K [auth B] | FLUORIDE ION F KRHYYFGTRYWZRS-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.157
- R-Value Work: 0.135
- R-Value Observed: 0.137
- Space Group: P 65
- Diffraction Data: https://doi.org/10.18430/M35EVC
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 85.328 | α = 90 |
| b = 85.328 | β = 90 |
| c = 113.997 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-12-02 Deposition Author(s): Maltseva, N., Kim, Y., Stam, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2015-12-02
Type: Initial release - Version 1.1: 2019-11-27
Changes: Author supporting evidence, Derived calculations, Structure summary - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
