5E26

Crystal structure of human PANK2: the catalytic core domain in complex with pantothenate and adenosine diphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.215 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of human PANK2: the catalytic core domain in complex with pantothenate and adenosine diphosphate

LOPPNAU, P.DONG, A.RAVICHANDRAN, M.CHENG, C.TEMPEL, W.SEITOVA, A.HUTCHINSON, A.HONG, B.S.Bountra, C.Arrowsmith, C.H.Edwards, A.M.BROWN, P.J.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pantothenate kinase 2, mitochondrial
A, B, C, D
365Homo sapiensMutation(s): 0 
Gene Names: PANK2C20orf48
EC: 2.7.1.33
Find proteins for Q9BZ23 (Homo sapiens)
Go to UniProtKB:  Q9BZ23
NIH Common Fund Data Resources
PHAROS  Q9BZ23
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download CCD File 
A, B, C, D
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
PAU
Query on PAU

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A, B, C, D
PANTOTHENOIC ACID
C9 H17 N O5
GHOKWGTUZJEAQD-ZETCQYMHSA-N
 Ligand Interaction
GOL
Query on GOL

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A, D
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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B, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
UNX
Query on UNX

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A, B, C, D
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.215 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.874α = 90
b = 109.717β = 90
c = 142.571γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
MOLREPphasing
PDB_EXTRACTdata extraction
HKL-3000data reduction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-21
    Type: Initial release