5E26

Crystal structure of human PANK2: the catalytic core domain in complex with pantothenate and adenosine diphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of human PANK2: the catalytic core domain in complex with pantothenate and adenosine diphosphate

LOPPNAU, P.DONG, A.RAVICHANDRAN, M.CHENG, C.TEMPEL, W.SEITOVA, A.HUTCHINSON, A.HONG, B.S.Bountra, C.Arrowsmith, C.H.Edwards, A.M.BROWN, P.J.Structural Genomics Consortium (SGC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pantothenate kinase 2, mitochondrial
A, B, C, D
365Homo sapiensMutation(s): 0 
Gene Names: PANK2 (C20orf48)
EC: 2.7.1.33
Find proteins for Q9BZ23 (Homo sapiens)
Go to Gene View: PANK2
Go to UniProtKB:  Q9BZ23
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

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A, B, C, D
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
B, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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A, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

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A, B, C, D
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
PAU
Query on PAU

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A, B, C, D
PANTOTHENOIC ACID
N-[(2R)-2,4-DIHYDROXY-3,3-DIMETHYLBUTANOYL]-BETA-ALANINE
C9 H17 N O5
GHOKWGTUZJEAQD-ZETCQYMHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.214 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 108.874α = 90.00
b = 109.717β = 90.00
c = 142.571γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement
MOLREPphasing
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-21
    Type: Initial release