Structure of human neuropilin-2 b1 domain with novel and unique zinc binding site
Tsai, Y.I., Frankel, P., Rana, R.R., Fotinou, C., Yelland, T.S., Zachary, I., Djordjevic, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Neuropilin-2 | 162 | Homo sapiens | Mutation(s): 0  Gene Names: NRP2, VEGF165R2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60462 (Homo sapiens) Explore O60462  Go to UniProtKB:  O60462 | |||||
PHAROS:  O60462 GTEx:  ENSG00000118257  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60462 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MES Query on MES | I [auth A] | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N | |||
ZN Query on ZN | B [auth A], C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | G [auth A], H [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 99.39 | α = 90 |
b = 105.27 | β = 90 |
c = 45.75 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Coot | model building |
SCALA | data scaling |
MOSFLM | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
British Heart Foundation | United Kingdom | PG/10/52/28448 |