5CYO

High resolution Septin 9 GTPase domain in complex with GDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0354 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

High resolution Septin 9 GTPase domain in complex with GDP

Matos, S.S.Leonardo, D.A.Pereira, H.M.Horjales, E.Araujo, A.P.U.Garratt, R.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Septin-9
A, B
274Homo sapiensMutation(s): 0 
Gene Names: SEPT9 (KIAA0991, MSF)
Find proteins for Q9UHD8 (Homo sapiens)
Go to Gene View: SEPT9
Go to UniProtKB:  Q9UHD8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A, B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0354 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 57.497α = 90.00
b = 78.049β = 105.92
c = 77.443γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XSCALEdata scaling
MOSFLMdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
FAPESPBrazil2014/15556-1

Revision History 

  • Version 1.0: 2016-08-03
    Type: Initial release
  • Version 1.1: 2017-11-01
    Type: Author supporting evidence, Derived calculations