5CHA

THE REFINEMENT AND THE STRUCTURE OF THE DIMER OF ALPHA-*CHYMOTRYPSIN AT 1.67-*ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The refinement and the structure of the dimer of alpha-chymotrypsin at 1.67-A resolution.

Blevins, R.A.Tulinsky, A.

(1985) J.Biol.Chem. 260: 4264-4275


  • PubMed Abstract: 
  • The two molecules of the asymmetric unit of the pH 3.5 conformer of alpha-chymotrypsin have been refined at 1.67-A resolution using restrained least squares methods with Hendrickson's program (PROLSQ). The final R factor is 0.179 (including 247 water ...

    The two molecules of the asymmetric unit of the pH 3.5 conformer of alpha-chymotrypsin have been refined at 1.67-A resolution using restrained least squares methods with Hendrickson's program (PROLSQ). The final R factor is 0.179 (including 247 water molecules). The folding of the main chain of the independent molecules is the same within experimental error but the same does not generally apply to the side chain stereochemistry. From this we conclude that the folding of a protein structure is basically independent of most of the detailed stereochemistry of its side chains. The side chains of the interface region between the independent molecules display pronounced asymmetry. This asymmetry suggests that dynamic and asymmetrical structural changes take place at the time of oligomerization leading to more energetically favorable interactions for the dimer. Comparison of the structures of the independent molecules of alpha-chymotrypsin with the structure of monomeric gamma-chymotrypsin revealed that although the folding of the three molecules is essentially the same, numerous and significant differences pervade the side chain stereochemistry attributable to general flexibility. The specificity site of alpha-chymotrypsin is occupied by ordered water molecules in a similar way to gamma-chymotrypsin and other proteins. Some of these water molecules are displaced when substrate binds to the enzyme, while the others appear to help identify and position the aromatic side chain in catalysis.


    Related Citations: 
    • The Structure of Alpha-Chymotrypsin. I. The Refinement of the Heavy-Atom Isomorphous Derivatives at 2.8 Angstroms Resolution
      Tulinsky, A.,Mani, N.V.,Morimoto, C.N.,Vandlen, R.L.
      (1973) Acta Crystallogr.,Sect.B 29: 1309
    • Asymmetrical Changes in the Tertiary Structure of Alpha-Chymotrypsin with Change in Ph
      Mavridis, A.,Tulinsky, A.,Liebman, M.N.
      (1974) Biochemistry 13: 3661
    • The Structure of Alpha-Chymotrypsin. II. Fourier Phase Refinement and Extension of the Dimeric Structure at 1.8 Angstroms Resolution by Density Modification
      Raghavan, N.V.,Tulinsky, A.
      (1979) Acta Crystallogr.,Sect.B 35: 1776
    • Variability in the Tertiary Structure of Alpha-Chymotrypsin at 2.8-Angstroms Resolution
      Tulinsky, A.,Vandlen, R.L.,Morimoto, C.N.,Mani, N.V.,Wright, L.H.
      (1973) Biochemistry 12: 4185
    • Least-Squares Refinement of Two Protein Molecules Per Asymmetric Unit with and without Non-Crystallographic Symmetry Restrained
      Tulinsky, A.,Blevins, R.A.
      (1986) Acta Crystallogr.,Sect.B 42: 198
    • Comparison of the Independent Solvent Structures of Dimeric Alpha-Chymotrypsin with Themselves and with Gamma-Chymotrypsin
      Blevins, R.A.,Tulinsky, A.
      (1985) J.Biol.Chem. 260: 8865



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ALPHA-CHYMOTRYPSIN A
A, E
13Bos taurusMutation(s): 0 
EC: 3.4.21.1
Find proteins for P00766 (Bos taurus)
Go to UniProtKB:  P00766
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ALPHA-CHYMOTRYPSIN A
B, F
131Bos taurusMutation(s): 0 
EC: 3.4.21.1
Find proteins for P00766 (Bos taurus)
Go to UniProtKB:  P00766
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ALPHA-CHYMOTRYPSIN A
C, G
97Bos taurusMutation(s): 0 
EC: 3.4.21.1
Find proteins for P00766 (Bos taurus)
Go to UniProtKB:  P00766
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 49.290α = 90.00
b = 67.480β = 102.02
c = 65.940γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1985-04-01
    Type: Initial release
  • Version 1.1: 2008-03-03
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance