5AZF

Crystal structure of LGG-1 complexed with a WEEL peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy

Wu, F.Watanabe, Y.Guo, X.Y.Qi, X.Wang, P.Zhao, H.Y.Wang, Z.Fujioka, Y.Zhang, H.Ren, J.Q.Fang, T.C.Shen, Y.X.Feng, W.Hu, J.J.Noda, N.N.Zhang, H.

(2015) Mol.Cell 60: 914-929


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein lgg-1
A, B
119Caenorhabditis elegansMutation(s): 0 
Gene Names: lgg-1
Find proteins for Q09490 (Caenorhabditis elegans)
Go to UniProtKB:  Q09490
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
peptide from Autophagy-related protein 19
C, D
4Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ATG19 (CVT19)
Find proteins for P35193 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P35193
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CD
Query on CD

Download SDF File 
Download CCD File 
A, B, D
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.201 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 95.280α = 90.00
b = 112.146β = 90.00
c = 35.859γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data scaling
HKL-2000data reduction
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sports, Science and Technology of JapanJapan25111004
Ministry of Education, Culture, Sports, Science and Technology of JapanJapan26870828

Revision History 

  • Version 1.0: 2015-12-30
    Type: Initial release